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Trans-eQTLs across different cancer types

In trans-eQTL analysis, we identified 231,210 eQTL−gene pairs at FDR < 0.05 in 33 cancer types for users to search or browse.

     

e.g., "PRAD"
e.g., "rs7231881"
e.g., "SMAD4"


     

Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-valule
Display
ACC rs16970322 chr13:108151556 T/C PRHOXNB chr13:28552243-28562774:- 0.57 7.8 2.61E-10 Box Plot
ACC rs17005393 chr3:69183635 G/T PRHOXNB chr13:28552243-28562774:- 0.72 9.41 8.15E-13 Box Plot
ACC rs17008803 chr3:71677066 G/T PRHOXNB chr13:28552243-28562774:- 0.57 7.76 3.1E-10 Box Plot
ACC rs17010904 chr1:222008757 C/T PRAMEF16 chr1:13495254-13498260:+ -0.59 -8.37 3.29E-11 Box Plot
ACC rs17010944 chr2:124922872 T/C GC chr4:72607410-72669758:- 0.68 9.87 1.65E-13 Box Plot
ACC rs17023073 chr1:119569751 G/A PRHOXNB chr13:28552243-28562774:- 0.64 8.76 8.23E-12 Box Plot
ACC rs17023135 chr1:119581151 T/C PRHOXNB chr13:28552243-28562774:- 0.63 8.69 1.06E-11 Box Plot
ACC rs17033205 chr2:107356310 A/C PRAMEF16 chr1:13495254-13498260:+ 0.61 7.89 1.88E-10 Box Plot
ACC rs17033256 chr2:107397023 C/T PRAMEF16 chr1:13495254-13498260:+ 0.67 9.56 4.72E-13 Box Plot
ACC rs17038558 chr3:39251001 C/T LMNB2 chr19:2427636-2456994:- -0.61 -7.9 1.83E-10 Box Plot
ACC rs17067129 chr13:46305834 A/G SSX2 chrX:52725946-52736239:- -1.42 -8.05 1.06E-10 Box Plot
ACC rs17185996 chr1:119608732 T/C PRHOXNB chr13:28552243-28562774:- 0.62 8.99 3.62E-12 Box Plot
ACC rs17186003 chr1:119617127 C/T PRHOXNB chr13:28552243-28562774:- 0.63 9.01 3.35E-12 Box Plot
ACC rs17186024 chr1:119672649 G/A PRHOXNB chr13:28552243-28562774:- 0.56 8.3 4.31E-11 Box Plot
ACC rs1722407 chr2:16877909 T/C TFDP3 chrX:132350697-132352376:- 1.08 8.56 1.68E-11 Box Plot